1D5R.A | PTEN

General Structure Information

PDB ID 1d5r
HGNC Gene Label(s) PTEN
Structure Name crystal structure of the pten tumor suppressor
Resolution 2.1Å
Reference AUTH J.O.LEE,H.YANG,M.M.GEORGESCU,A.DI CRISTOFANO,AUTH 2 T.MAEHAMA,Y.SHI,J.E.DIXON,P.PANDOLFI,N.P.PAVLETICHTITL CRYSTAL STRUCTURE OF THE PTEN TUMOR SUPPRESSOR:TITL 2 IMPLICATIONS FOR ITS PHOSPHOINOSITIDE PHOSPHATASETITL 3 ACTIVITY AND MEMBRANE ASSOCIATION.REF CELL(CAMBRIDGE,MASS.) V. 99 323 1999REFN ISSN 0092-8674PMID 10555148DOI 10.1016/S0092-8674(00)81663-3

Variant Set Distributions

ExAC Variants

Number Of Residues 307
Number Of SNVs 21
Number Of Permutations 10731
Optimal Distance Threshold 15.0
K Statistic 0.105
p-value 0.176
ClinVar

Number Of Residues 307
Number Of SNVs 47
Number Of Permutations 25135
Optimal Distance Threshold 12.0
K Statistic 0.203
p-value 0.0
COSMIC

Number Of Residues 307
Number Of SNVs 107
Number Of Permutations 44245
Optimal Distance Threshold 10.0
K Statistic 0.079
p-value 0.0

Ripley’s K Analysis Plots

ExACClinVarCOSMIC

Variant Set Comparisons

ClinVar vs. ExAC

Number Of ExAC SNVs 21
Number Of ClinVar SNVs 41
Optimal Distance Threshold 15.0
K Statistic 0.206
p-value 0.0
Cosmic vs. ExAC

Number Of ExAC SNVs 21
Number Of COSMIC SNVs 60
Optimal Distance Threshold 27.0
K Statistic 0.212
p-value 0.006

Pathogenic Proximity Analysis

ClinVar PathProx Analysis
COSMIC PathProx Analysis

Mapped Variants

[+] ExAC Missense Variants

[+] ClinVar Missense Variants

[+] COSMIC Missense Variants