General Structure Information
| PDB ID | 3f8u |
| HGNC Gene Label(s) | PDIA3 |
| Structure Name | tapasin/erp57 heterodimer |
| Resolution | 2.6Å |
| Reference | AUTH G.DONG,P.A.WEARSCH,D.R.PEAPER,P.CRESSWELL,K.M.REINISCHTITL INSIGHTS INTO MHC CLASS I PEPTIDE LOADING FROM THE STRUCTURETITL 2 OF THE TAPASIN-ERP57 THIOL OXIDOREDUCTASE HETERODIMER.REF IMMUNITY V. 30 21 2009REFN ISSN 1074-7613PMID 19119025DOI 10.1016/J.IMMUNI.2008.10.018 |
Variant Set Distributions
ExAC Variants
| Number Of Residues | 462 |
| Number Of SNVs | 110 |
| Number Of Permutations | 29332 |
| Optimal Distance Threshold | 30.0 |
| K Statistic | 0.347 |
| p-value | 0.617 |
Mapped Variants
[+] ExAC Missense Variants
| Position | Variant | AA Change | PDB Chain Position | Structure Coordinates |
|---|---|---|---|---|
| 15:44038814 | D>G | C:26 | (28.40, 85.10, 40.18) | |
| 15:44038833 | D>E | C:32 | (42.72, 90.90, 54.67) | |
| 15:44038834 | D>Y | C:33 | (37.75, 91.91, 56.70) | |
| 15:44038835 | D>G | C:33 | (37.75, 91.91, 56.70) | |
| 15:44038843 | E>K | C:36 | (39.96, 83.29, 57.68) | |
| 15:44038847 | S>T | C:37 | (34.60, 84.02, 57.44) | |
| 15:44038850 | rs61734331 | R>L | C:38 | (32.70, 85.25, 52.87) |
| 15:44038854 | I>M | C:39 | (37.08, 80.44, 53.24) | |
| 15:44038858 | rs4080719 | D>Y | C:41 | (30.55, 79.98, 53.19) |
| 15:44038874 | G>D | C:46 | (33.64, 72.56, 50.62) | |
| 15:44038879 | M>L | C:48 | (36.04, 78.32, 47.69) | |
| 15:44038900 | P>S | C:55 | (44.95, 94.73, 38.95) | |
| 15:44046037 | rs535800039 | K>N | C:61 | (44.19, 92.16, 32.72) |
| 15:44046041 | rs139502481 | L>I | C:63 | (41.41, 84.66, 33.97) |
| 15:44046052 | E>D | C:66 | (37.32, 82.71, 30.94) | |
| 15:44046092 | L>V | C:80 | (34.53, 81.05, 42.09) | |
| 15:44048857 | rs373449252 | T>I | C:86 | (47.29, 95.20, 46.02) |
| 15:44048863 | N>S | C:88 | (44.31, 92.21, 50.67) | |
| 15:44048878 | N>S | C:93 | (51.84, 87.19, 52.66) | |
| 15:44048889 | V>I | C:97 | (51.03, 84.67, 46.77) | |
| 15:44048896 | G>E | C:99 | (51.84, 85.09, 41.66) | |
| 15:44048916 | COSM3420319 | F>L | C:106 | (40.84, 77.17, 49.93) |
| 15:44048923 | D>A | C:108 | (36.14, 72.49, 54.89) | |
| 15:44048934 | A>T | C:112 | (43.73, 72.11, 48.68) | |
| 15:44048938 | rs553813975 | G>V | C:113 | (45.76, 73.00, 46.33) |
| 15:44048940 | A>T | C:114 | (46.69, 74.07, 43.22) | |
| 15:44048941 | A>V | C:114 | (46.69, 74.07, 43.22) | |
| 15:44048955 | R>G | C:119 | (44.97, 79.96, 33.68) | |
| 15:44053630 | V>I | C:125 | (33.59, 74.17, 35.06) | |
| 15:44053647 | rs543412569 | K>N | C:130 | (35.48, 64.93, 39.23) |
| 15:44053666 | rs372871422 | V>M | C:137 | (29.41, 59.16, 40.68) |
| 15:44053670 | P>R | C:138 | (26.46, 57.53, 42.33) | |
| 15:44053672 | L>V | C:139 | (25.57, 55.17, 38.56) | |
| 15:44053684 | E>K | C:143 | (20.13, 57.84, 32.18) | |
| 15:44053702 | rs55968494 | I>V | C:149 | (30.20, 55.96, 29.62) |
| 15:44053703 | I>S | C:149 | (30.20, 55.96, 29.62) | |
| 15:44053720 | rs542820973 | S>P | C:155 | (35.31, 55.95, 32.61) |
| 15:44053725 | I>M | C:156 | (36.92, 54.67, 36.44) | |
| 15:44055278 | F>C | C:159 | (30.33, 47.46, 37.95) | |
| 15:44055280 | F>L | C:160 | (30.69, 47.09, 43.58) | |
| 15:44055283 | D>N | C:161 | (26.04, 43.06, 44.46) | |
| 15:44055286 | D>N | C:162 | (27.71, 43.99, 48.83) | |
| 15:44055296 | rs199676605 | S>N | C:165 | (32.04, 45.29, 49.82) |
| 15:44055300 | E>D | C:166 | (37.05, 44.52, 51.36) | |
| 15:44055310 | E>K | C:170 | (39.81, 49.15, 48.79) | |
| 15:44055322 | A>T | C:174 | (40.82, 55.18, 44.98) | |
| 15:44055332 | COSM1740166 | N>S | C:177 | (43.46, 58.51, 46.59) |
| 15:44055333 | N>K | C:177 | (43.46, 58.51, 46.59) | |
| 15:44055336 | rs368603838 | L>F | C:178 | (43.14, 58.70, 41.95) |
| 15:44055343 | rs202041084 | N>D | C:181 | (44.00, 62.50, 38.04) |
| 15:44055344 | rs139812953 | N>S | C:181 | (44.00, 62.50, 38.04) |
| 15:44055350 | R>Q | C:183 | (35.21, 60.48, 34.83) | |
| 15:44055379 | rs192183348 | V>M | C:193 | (26.26, 44.32, 38.19) |
| 15:44055385 | rs200051575 COSM1373069 |
E>Q | C:195 | (26.48, 43.86, 31.04) |
| 15:44055392 | rs201790285 | D>G | C:197 | (31.16, 40.93, 36.90) |
| 15:44055400 | G>R | C:200 | (29.57, 41.22, 41.82) | |
| 15:44057650 | G>V | C:202 | (33.98, 45.15, 39.35) | |
| 15:44057665 | rs113762568 | R>H | C:207 | (39.93, 52.96, 26.45) |
| 15:44057670 | S>A | C:209 | (33.73, 56.71, 22.14) | |
| 15:44057673 | H>Y | C:210 | (36.40, 60.25, 20.87) | |
| 15:44057674 | H>R | C:210 | (36.40, 60.25, 20.87) | |
| 15:44057710 | Y>C | C:222 | (40.88, 44.65, 38.48) | |
| 15:44057715 | COSM555204 | E>Q | C:224 | (44.37, 41.73, 40.08) |
| 15:44057724 | M>V | C:227 | (39.59, 44.73, 44.61) | |
| 15:44057734 | rs567884544 | G>D | C:230 | (46.67, 50.06, 44.61) |
| 15:44057746 | K>R | C:234 | (49.28, 50.17, 40.30) | |
| 15:44057763 | rs149089784 | I>V | C:240 | (43.93, 55.09, 30.91) |
| 15:44058098 | P>S | C:245 | (47.24, 58.07, 22.76) | |
| 15:44058103 | H>Q | C:246 | (44.83, 63.32, 21.63) | |
| 15:44058107 | T>A | C:248 | (46.69, 66.68, 25.41) | |
| 15:44058108 | T>R | C:248 | (46.69, 66.68, 25.41) | |
| 15:44058132 | Q>R | C:256 | (56.20, 63.25, 26.52) | |
| 15:44058146 | rs151274866 | L>V | C:261 | (55.67, 57.54, 17.33) |
| 15:44058165 | V>A | C:267 | (44.49, 66.63, 16.06) | |
| 15:44058182 | A>T | C:273 | (36.92, 64.24, 13.84) | |
| 15:44058189 | G>A | C:275 | (39.72, 62.91, 10.29) | |
| 15:44058195 | N>S | C:277 | (39.68, 58.74, 13.60) | |
| 15:44058937 | V>A | C:286 | (51.37, 50.18, 11.43) | |
| 15:44058965 | H>Q | C:295 | (58.70, 45.18, 17.80) | |
| 15:44058993 | rs575256148 | K>E | C:305 | (48.07, 74.49, 15.91) |
| 15:44059048 | I>T | C:323 | (50.27, 65.82, 5.22) | |
| 15:44059054 | V>A | C:325 | (54.54, 64.77, 10.58) | |
| 15:44059062 | I>V | C:328 | (60.81, 58.53, 17.15) | |
| 15:44059092 | M>L | C:338 | (59.03, 59.96, 8.53) | |
| 15:44059108 | S>L | C:343 | (51.36, 56.60, 3.24) | |
| 15:44060688 | COSM962059 | R>C | C:344 | (46.16, 58.80, 2.29) |
| 15:44060724 | Y>H | C:356 | (63.16, 52.53, 15.73) | |
| 15:44060731 | D>G | C:358 | (66.04, 46.96, 11.87) | |
| 15:44060748 | Y>D | C:364 | (67.32, 65.93, 13.44) | |
| 15:44060755 | K>R | C:366 | (70.17, 72.15, 14.91) | |
| 15:44060769 | P>A | C:371 | (82.46, 71.78, 5.98) | |
| 15:44060779 | rs374627089 | N>S | C:374 | (87.68, 71.44, 7.92) |
| 15:44061726 | A>V | C:383 | (76.67, 68.25, 14.76) | |
| 15:44061730 | rs375102239 COSM962061 |
E>D | C:384 | (76.46, 66.19, 10.72) |
| 15:44061732 | rs368148196 | N>S | C:385 | (81.60, 66.89, 12.47) |
| 15:44061749 | rs200746018 | N>D | C:391 | (84.69, 62.37, 20.40) |
| 15:44061750 | N>S | C:391 | (84.69, 62.37, 20.40) | |
| 15:44061763 | K>N | C:395 | (93.39, 63.47, 18.62) | |
| 15:44061779 | F>L | C:401 | (81.13, 75.36, 22.32) | |
| 15:44061804 | C>Y | C:409 | (83.48, 85.77, 20.50) | |
| 15:44061807 | K>R | C:410 | (84.67, 89.73, 16.68) | |
| 15:44061818 | P>S | C:414 | (91.63, 86.43, 16.21) | |
| 15:44061819 | P>L | C:414 | (91.63, 86.43, 16.21) | |
| 15:44061822 | rs6413485 | K>R | C:415 | (93.24, 86.22, 20.34) |
| 15:44062454 | K>Q | C:425 | (104.09, 71.80, 13.30) | |
| 15:44062469 | rs375987208 | V>I | C:430 | (92.47, 69.54, 17.61) |
| 15:44062476 | rs199671931 | A>V | C:432 | (87.94, 73.75, 17.55) |
| 15:44062494 | A>D | C:438 | (73.47, 76.27, 14.71) | |
| 15:44062526 | G>S | C:449 | (77.80, 80.98, 27.57) | |
| 15:44062733 | I>M | C:453 | (86.06, 77.11, 26.16) | |
| 15:44062774 | rs377493395 | Y>C | C:467 | (89.81, 77.49, 29.62) |
| 15:44063318 | S>G | C:474 | (99.22, 83.15, 26.85) | |
| 15:44063328 | I>T | C:477 | (100.05, 78.21, 24.98) | |
| 15:44063334 | Y>F | C:479 | (94.82, 74.43, 29.63) | |
| 15:44063336 | rs377030034 | L>V | C:480 | (97.58, 73.22, 25.82) |
| 15:44063348 | rs149410584 | A>T | C:484 | (98.50, 67.78, 27.36) |
| 15:44063357 | rs542695609 | P>T | C:487 | (104.30, 66.26, 24.99) |
| 15:44063360 | P>S | C:488 | (103.09, 70.16, 23.66) | |
| 15:44063367 | I>S | C:490 | (104.30, 75.22, 20.60) |