1L5S.A | PYGL

General Structure Information

PDB ID 1l5s
HGNC Gene Label(s) PYGL
Structure Name human liver glycogen phosphorylase complexed with uric acid, n-acetyl- beta-d-glucopyranosylamine, and cp-403,700
Resolution 2.1Å
Reference AUTH J.L.EKSTROM,T.A.PAULY,M.D.CARTY,W.C.SOELLER,J.CULP,AUTH 2 D.E.DANLEY,D.J.HOOVER,J.L.TREADWAY,E.M.GIBBS,R.J.FLETTERICK,AUTH 3 Y.S.DAY,D.G.MYSZKA,V.L.RATHTITL STRUCTURE-ACTIVITY ANALYSIS OF THE PURINE BINDING SITE OFTITL 2 HUMAN LIVER GLYCOGEN PHOSPHORYLASE.REF CHEM.BIOL. V. 9 915 2002REFN ISSN 1074-5521PMID 12204691DOI 10.1016/S1074-5521(02)00186-2

Variant Set Distributions

ExAC Variants

Number Of Residues 793
Number Of SNVs 214
Number Of Permutations 83656
Optimal Distance Threshold 11.0
K Statistic 0.035
p-value 0.244
ClinVar

Number Of Residues 793
Number Of SNVs 11
Number Of Permutations 8856
Optimal Distance Threshold 13.0
K Statistic 0.273
p-value 0.0
COSMIC

Number Of Residues 793
Number Of SNVs 12
Number Of Permutations 3883
Optimal Distance Threshold 16.0
K Statistic 0.045
p-value 0.721

Ripley’s K Analysis Plots

ExACClinVarCOSMIC

Variant Set Comparisons

ClinVar vs. ExAC

Number Of ExAC SNVs 214
Number Of ClinVar SNVs 11
Optimal Distance Threshold 13.0
K Statistic 0.221
p-value 0.001
Cosmic vs. ExAC

Number Of ExAC SNVs 214
Number Of COSMIC SNVs 10
Optimal Distance Threshold 17.0
K Statistic -0.064
p-value 0.871

Mapped Variants

[+] ExAC Missense Variants

[+] ClinVar Missense Variants

[+] COSMIC Missense Variants