3K71.D | ITGB2

General Structure Information

PDB ID 3k71
HGNC Gene Label(s) ITGB2
Structure Name structure of integrin alphax beta2 ectodomain
Resolution 3.95Å
Reference AUTH C.XIE,J.ZHU,X.CHEN,L.MI,N.NISHIDA,T.A.SPRINGERTITL STRUCTURE OF AN INTEGRIN WITH AN ALPHAI DOMAIN,TITL 2 COMPLEMENT RECEPTOR TYPE 4.REF EMBO J. V. 29 666 2010REFN ISSN 0261-4189PMID 20033057DOI 10.1038/EMBOJ.2009.367

Variant Set Distributions

ExAC Variants

Number Of Residues 673
Number Of SNVs 203
Number Of Permutations 54645
Optimal Distance Threshold 14.0
K Statistic 0.05
p-value 0.007
ClinVar

Number Of Residues 673
Number Of SNVs 13
Number Of Permutations 4731
Optimal Distance Threshold 25.0
K Statistic 0.551
p-value 0.001
COSMIC

Number Of Residues 673
Number Of SNVs 12
Number Of Permutations 15143
Optimal Distance Threshold 20.0
K Statistic 0.045
p-value 0.779

Ripley’s K Analysis Plots

ExACClinVarCOSMIC

Variant Set Comparisons

ClinVar vs. ExAC

Number Of ExAC SNVs 203
Number Of ClinVar SNVs 12
Optimal Distance Threshold 25.0
K Statistic 0.379
p-value 0.001
Cosmic vs. ExAC

Number Of ExAC SNVs 203
Number Of COSMIC SNVs 11
Optimal Distance Threshold 24.0
K Statistic -0.114
p-value 0.902

Pathogenic Proximity Analysis

ClinVar PathProx Analysis
COSMIC PathProx Analysis

Mapped Variants

[+] ExAC Missense Variants

[+] ClinVar Missense Variants

[+] COSMIC Missense Variants