General Structure Information
| PDB ID | 2b0o |
| HGNC Gene Label(s) | ASAP3 |
| Structure Name | crystal structure of uplc1 gap domain |
| Resolution | 2.06Å |
| Reference | AUTH S.ISMAIL,L.SHEN,C.ARROWSMITH,A.EDWARDS,M.SUNDSTROM,AUTH 2 J.WEIGELT,A.BOCHKAREV,H.PARKTITL STRUCTURAL ANALYSIS OF GAP AND ANKYRIN DOMAINS OFTITL 2 UPLC1REF TO BE PUBLISHEDREFN |
Variant Set Distributions
ExAC Variants
| Number Of Residues | 264 |
| Number Of SNVs | 86 |
| Number Of Permutations | 40356 |
| Optimal Distance Threshold | 6.0 |
| K Statistic | 0.022 |
| p-value | 0.843 |
COSMIC

Ripley’s K Analysis Plots
ExACCOSMIC


Variant Set Comparisons
Cosmic vs. ExAC
| Number Of ExAC SNVs | 86 |
| Number Of COSMIC SNVs | 3 |
| Optimal Distance Threshold | 27.0 |
| K Statistic | 0.436 |
| p-value | 0.508 |
Pathogenic Proximity Analysis
COSMIC PathProx Analysis


Mapped Variants
[+] ExAC Missense Variants
| Position | Variant | AA Change | PDB Chain Position | Structure Coordinates |
|---|---|---|---|---|
| 1:23763683 | L>F | E:428 | (-32.18, 9.89, 28.21) | |
| 1:23763680 | I>L | E:429 | (-36.24, 8.62, 31.24) | |
| 1:23763676 | rs146159261 | A>V | E:430 | (-37.75, 6.90, 27.37) |
| 1:23763671 | V>M | E:432 | (-34.26, 3.61, 30.13) | |
| 1:23763666 | rs370693470 | K>N | E:433 | (-39.05, 3.56, 30.64) |
| 1:23763535 | rs535978345 COSM3485702 |
P>S | E:449 | (-40.78, -0.48, 36.15) |
| 1:23763492 | rs547079352 | Q>R | E:463 | (-43.19, -3.73, 46.74) |
| 1:23763486 | S>L | E:465 | (-37.25, -0.27, 45.86) | |
| 1:23763480 | V>A | E:467 | (-35.56, -4.47, 49.43) | |
| 1:23763481 | V>F | E:467 | (-35.56, -4.47, 49.43) | |
| 1:23763475 | R>C | E:469 | (-33.90, 2.15, 49.70) | |
| 1:23763469 | L>V | E:471 | (-29.44, -4.13, 50.39) | |
| 1:23763460 | rs373421354 | R>C | E:474 | (-21.60, -0.82, 50.82) |
| 1:23763448 | M>V | E:478 | (-32.92, 3.02, 44.31) | |
| 1:23763426 | L>Q | E:485 | (-33.10, 15.35, 40.18) | |
| 1:23763420 | G>D | E:487 | (-29.41, 12.68, 34.79) | |
| 1:23763146 | L>Q | E:493 | (-25.15, 1.79, 33.70) | |
| 1:23763144 | A>T | E:494 | (-29.58, 2.27, 32.20) | |
| 1:23763139 | rs148723559 | L>F | E:495 | (-29.02, 4.02, 28.60) |
| 1:23763137 | N>S | E:496 | (-25.91, 0.71, 28.26) | |
| 1:23763135 | M>V | E:497 | (-27.74, -3.17, 31.61) | |
| 1:23763125 | T>M | E:500 | (-33.14, -8.93, 29.81) | |
| 1:23763121 | S>R | E:501 | (-29.14, -8.04, 30.10) | |
| 1:23763116 | N>S | E:503 | (-31.98, -11.00, 34.82) | |
| 1:23763107 | M>T | E:506 | (-27.79, -11.97, 38.19) | |
| 1:23763096 | L>V | E:510 | (-33.81, -19.29, 37.90) | |
| 1:23763090 | S>T | E:512 | (-38.98, -22.39, 33.82) | |
| 1:23763080 | G>A | E:515 | (-39.31, -20.63, 41.51) | |
| 1:23763077 | rs140530758 COSM110341 |
P>R | E:516 | (-37.44, -18.30, 43.65) |
| 1:23763075 | rs201865670 | K>E | E:517 | (-38.61, -14.26, 40.25) |
| 1:23763058 | S>R | E:522 | (-45.30, -11.36, 46.71) | |
| 1:23763056 | D>V | E:523 | (-44.48, -11.94, 51.10) | |
| 1:23762519 | rs202004624 | G>A | E:525 | (-40.23, -11.92, 52.77) |
| 1:23762514 | rs371915285 | R>C | E:527 | (-40.92, -8.94, 47.63) |
| 1:23762507 | D>G | E:529 | (-35.64, -13.86, 51.34) | |
| 1:23762496 | A>S | E:533 | (-29.97, -13.92, 47.05) | |
| 1:23762469 | COSM2048481 | R>C | E:542 | (-24.12, -17.21, 33.69) |
| 1:23762465 | rs148195646 | R>Q | E:543 | (-21.03, -21.04, 39.46) |
| 1:23762466 | COSM2048480 | R>W | E:543 | (-21.03, -21.04, 39.46) |
| 1:23762463 | C>G | E:544 | (-17.67, -18.04, 36.06) | |
| 1:23762454 | E>K | E:547 | (-10.31, -16.55, 34.05) | |
| 1:23762444 | R>Q | E:550 | (-12.93, -15.53, 31.74) | |
| 1:23762436 | T>S | E:553 | (-10.71, -10.11, 26.64) | |
| 1:23762432 | A>V | E:554 | (-13.91, -8.06, 28.28) | |
| 1:23762428 | rs144216953 | I>M | E:555 | (-12.10, -4.79, 29.71) |
| 1:23762415 | L>F | E:560 | (-21.18, -4.56, 30.50) | |
| 1:23762408 | S>L | E:562 | (-18.57, -10.39, 30.94) | |
| 1:23762397 | A>T | E:566 | (-17.24, -11.37, 37.15) | |
| 1:23762390 | A>V | E:568 | (-21.39, -12.47, 39.94) | |
| 1:23762376 | F>L | E:573 | (-13.20, -5.78, 39.82) | |
| 1:23762366 | P>L | E:576 | (-3.76, -7.76, 39.52) | |
| 1:23762367 | P>S | E:576 | (-3.76, -7.76, 39.52) | |
| 1:23761110 | A>V | E:584 | (4.55, -6.46, 32.89) | |
| 1:23761108 | rs146392307 | P>S | E:585 | (2.29, -4.53, 31.81) |
| 1:23761096 | rs150324380 | V>I | E:589 | (-9.56, -3.89, 36.37) |
| 1:23761081 | V>L | E:594 | (-9.42, 4.09, 31.95) | |
| 1:23761077 | rs188720319 | K>T | E:595 | (-5.15, 2.28, 28.73) |
| 1:23761071 | A>V | E:597 | (-11.61, 4.00, 26.72) | |
| 1:23761072 | A>T | E:597 | (-11.61, 4.00, 26.72) | |
| 1:23761067 | N>K | E:598 | (-14.55, 4.05, 23.83) | |
| 1:23761060 | S>A | E:601 | (-16.57, 1.89, 27.23) | |
| 1:23761056 | L>P | E:602 | (-17.94, 5.29, 29.31) | |
| 1:23761053 | rs146999625 | P>R | E:603 | (-20.63, 1.94, 30.53) |
| 1:23761029 | N>S | E:611 | (-20.01, -1.99, 41.64) | |
| 1:23761026 | rs201997487 | G>A | E:612 | (-15.74, -2.12, 43.04) |
| 1:23760851 | D>V | E:616 | (-8.16, 4.45, 46.03) | |
| 1:23760839 | A>V | E:620 | (3.90, 0.14, 40.88) | |
| 1:23760836 | rs142199725 | D>V | E:621 | (3.74, 3.67, 38.77) |
| 1:23760829 | N>K | E:623 | (-0.24, 5.81, 38.49) | |
| 1:23760816 | Y>H | E:628 | (-3.54, 4.89, 33.82) | |
| 1:23760813 | A>T | E:629 | (-7.22, 9.59, 32.78) | |
| 1:23760807 | L>F | E:631 | (-1.55, 9.21, 30.74) | |
| 1:23760803 | Y>S | E:632 | (-3.59, 6.64, 28.70) | |
| 1:23760798 | Q>K | E:634 | (-9.90, 9.07, 28.82) | |
| 1:23760791 | D>G | E:636 | (-15.81, 11.26, 29.85) | |
| 1:23760792 | rs113419927 | D>N | E:636 | (-15.81, 11.26, 29.85) |
| 1:23760789 | C>R | E:637 | (-13.25, 8.51, 32.77) | |
| 1:23760753 | G>R | E:649 | (-3.78, 15.09, 44.64) | |
| 1:23760749 | T>I | E:650 | (-2.68, 11.85, 44.78) | |
| 1:23760177 | A>G | E:654 | (7.24, 10.71, 40.25) | |
| 1:23760157 | rs144319319 | I>V | E:661 | (0.07, 13.69, 33.95) |
| 1:23760153 | A>V | E:662 | (-2.43, 16.83, 31.93) | |
| 1:23760138 | H>R | E:667 | (-4.19, 15.85, 27.79) | |
| 1:23760133 | rs138556791 | E>K | E:669 | (-11.52, 18.30, 28.92) |
| 1:23760129 | C>Y | E:670 | (-8.09, 16.76, 31.73) | |
| 1:23760018 | Q>P | E:676 | (-12.69, 22.48, 38.07) | |
| 1:23760011 | rs199856800 | Q>H | E:678 | (-6.93, 20.45, 42.90) |
| 1:23760013 | rs146824903 | Q>K | E:678 | (-6.93, 20.45, 42.90) |
| 1:23760009 | A>V | E:679 | (-10.75, 23.72, 44.18) | |
| 1:23760000 | rs368585298 | F>S | E:682 | (-9.28, 23.71, 49.50) |
| 1:23759998 | A>S | E:683 | (-14.78, 23.94, 48.92) | |
| 1:23759992 | P>S | E:685 | (-15.91, 25.55, 54.09) |
[+] COSMIC Missense Variants
| Position | Variant | AA Change | PDB Chain Position | Structure Coordinates |
|---|---|---|---|---|
| 1:23763113 | COSM4781216 | E>A | E:504 | (-28.53, -13.10, 30.20) |
| 1:23762513 | COSM2048483 | R>H | E:527 | (-40.92, -8.94, 47.63) |
| 1:23762396 | COSM1718098 | A>V | E:566 | (-17.24, -11.37, 37.15) |