General Structure Information
| PDB ID | 1znq |
| HGNC Gene Label(s) | GAPDH |
| Structure Name | crsytal structure of human liver gapdh |
| Resolution | 2.5Å |
| Reference | AUTH S.A.ISMAIL,H.W.PARKTITL CRYSTAL STRUCTURE ANALYSIS OF HUMAN LIVER GAPDHREF TO BE PUBLISHEDREFN |
Variant Set Distributions
ExAC Variants
| Number Of Residues | 333 |
| Number Of SNVs | 67 |
| Number Of Permutations | 34099 |
| Optimal Distance Threshold | 21.0 |
| K Statistic | 0.319 |
| p-value | 0.458 |
Mapped Variants
[+] ExAC Missense Variants
| Position | Variant | AA Change | PDB Chain Position | Structure Coordinates |
|---|---|---|---|---|
| 12:6644008 | rs367765818 | V>M | O:4 | (68.02, 16.81, 12.34) |
| 12:6644009 | rs369545182 | V>A | O:4 | (68.02, 16.81, 12.34) |
| 12:6644013 | rs371408635 | K>N | O:5 | (67.81, 19.40, 8.46) |
| 12:6644014 | COSM1704957 | V>I | O:6 | (62.60, 19.19, 10.97) |
| 12:6644018 | G>A | O:7 | (59.30, 19.10, 9.37) | |
| 12:6645676 | R>C | O:16 | (51.66, 26.92, 16.81) | |
| 12:6645727 | rs376494973 | I>V | O:33 | (56.24, 24.81, 8.10) |
| 12:6645732 | N>K | O:34 | (52.43, 22.21, 5.34) | |
| 12:6645850 | V>I | O:44 | (54.13, 35.55, 11.97) | |
| 12:6645857 | M>T | O:46 | (49.28, 31.83, 15.07) | |
| 12:6645884 | K>R | O:55 | (55.65, 37.48, 22.84) | |
| 12:6645896 | T>I | O:59 | (62.91, 36.90, 15.98) | |
| 12:6645898 | rs11549351 | V>I | O:60 | (58.90, 36.12, 14.09) |
| 12:6645913 | G>R | O:65 | (58.58, 33.71, 1.71) | |
| 12:6645922 | V>L | O:68 | (62.55, 34.23, 9.71) | |
| 12:6645928 | N>H | O:70 | (65.67, 33.20, 16.04) | |
| 12:6645929 | rs201368443 | N>S | O:70 | (65.67, 33.20, 16.04) |
| 12:6645935 | N>S | O:72 | (66.73, 30.49, 11.41) | |
| 12:6645938 | P>H | O:73 | (65.49, 30.48, 7.07) | |
| 12:6646097 | S>C | O:83 | (52.04, 13.38, -1.49) | |
| 12:6646106 | rs552376556 | K>R | O:86 | (58.25, 19.22, -2.95) |
| 12:6646132 | rs371192512 COSM942606 |
V>I | O:95 | (58.12, 14.89, 8.98) |
| 12:6646135 | V>M | O:96 | (56.19, 16.48, 12.59) | |
| 12:6646150 | rs149945423 | V>I | O:101 | (44.14, 13.93, 9.48) |
| 12:6646156 | T>A | O:103 | (47.19, 8.81, 12.42) | |
| 12:6646164 | rs375963780 | M>I | O:105 | (51.83, 3.15, 8.77) |
| 12:6646316 | rs146516445 | A>V | O:126 | (46.67, 2.07, 14.75) |
| 12:6646333 | V>I | O:132 | (57.34, 7.01, 25.66) | |
| 12:6646339 | G>S | O:134 | (61.76, 6.81, 29.30) | |
| 12:6646351 | E>K | O:138 | (66.59, 2.89, 24.18) | |
| 12:6646373 | K>R | O:145 | (61.10, 4.57, 7.66) | |
| 12:6646376 | I>N | O:146 | (56.29, 5.49, 9.91) | |
| 12:6646378 | rs376053895 | I>L | O:147 | (57.39, 6.74, 14.58) |
| 12:6646495 | N>S | O:155 | (53.88, 10.72, 27.44) | |
| 12:6646519 | V>A | O:163 | (58.38, 3.76, 38.64) | |
| 12:6646525 | H>R | O:165 | (55.29, -2.81, 37.23) | |
| 12:6646529 | D>E | O:166 | (59.70, -1.47, 37.79) | |
| 12:6646534 | F>C | O:168 | (55.95, -1.24, 44.39) | |
| 12:6646542 | COSM1323110 | V>M | O:171 | (47.70, -6.26, 39.60) |
| 12:6646750 | T>A | O:176 | (40.77, 9.50, 35.64) | |
| 12:6646828 | A>T | O:202 | (33.60, 23.83, 26.83) | |
| 12:6646831 | L>F | O:203 | (32.78, 27.67, 29.18) | |
| 12:6646840 | I>V | O:206 | (32.19, 18.54, 33.50) | |
| 12:6646868 | K>R | O:215 | (44.42, -0.21, 25.97) | |
| 12:6646880 | K>R | O:219 | (51.02, -1.37, 23.33) | |
| 12:6646894 | L>M | O:224 | (51.26, -3.03, 32.32) | |
| 12:6646934 | T>I | O:237 | (40.95, 24.62, 31.69) | |
| 12:6646937 | A>V | O:238 | (43.31, 26.15, 28.55) | |
| 12:6646951 | V>L | O:243 | (46.71, 11.60, 35.90) | |
| 12:6646952 | V>A | O:243 | (46.71, 11.60, 35.90) | |
| 12:6646966 | rs546169843 | R>C | O:248 | (45.33, -5.02, 42.95) |
| 12:6646967 | R>H | O:248 | (45.33, -5.02, 42.95) | |
| 12:6646990 | D>Y | O:256 | (56.36, 7.61, 52.59) | |
| 12:6646996 | I>V | O:258 | (55.29, 5.25, 46.58) | |
| 12:6647017 | rs377461105 | A>T | O:265 | (63.32, 8.52, 39.36) |
| 12:6647018 | rs528329572 | A>V | O:265 | (63.32, 8.52, 39.36) |
| 12:6647021 | rs11549316 | S>L | O:266 | (63.24, 12.33, 39.43) |
| 12:6647041 | rs371787931 | I>V | O:273 | (60.62, 12.81, 31.68) |
| 12:6647048 | G>D | O:275 | (58.40, 14.43, 38.44) | |
| 12:6647061 | H>Q | O:279 | (55.88, 22.14, 46.83) | |
| 12:6647087 | rs568135688 | S>T | O:288 | (55.24, 26.20, 30.47) |
| 12:6647089 | D>N | O:289 | (56.40, 22.09, 32.93) | |
| 12:6647114 | A>G | O:297 | (52.61, 13.81, 47.03) | |
| 12:6647126 | I>T | O:301 | (44.98, 8.82, 49.05) | |
| 12:6647128 | A>S | O:302 | (46.12, 5.43, 50.59) | |
| 12:6647131 | L>V | O:303 | (42.69, 2.36, 51.45) | |
| 12:6647135 | rs374950549 | N>S | O:304 | (45.74, -0.33, 51.38) |
| 12:6647136 | N>K | O:304 | (45.74, -0.33, 51.38) | |
| 12:6647137 | D>N | O:305 | (49.98, -1.26, 52.04) | |
| 12:6647283 | G>S | O:319 | (55.57, 18.42, 27.00) | |
| 12:6647318 | H>Q | O:330 | (67.09, 8.74, 20.36) | |
| 12:6647319 | M>V | O:331 | (65.39, 9.56, 15.94) | |
| 12:6647331 | E>K | O:335 | (70.93, 7.83, 11.61) |