General Structure Information
| PDB ID | 1ln3 |
| HGNC Gene Label(s) | PCTP |
| Structure Name | structure of human phosphatidylcholine transfer protein in complex with palmitoyl-linoleoyl phosphatidylcholine (seleno-met protein) |
| Resolution | 2.9Å |
| Reference | AUTH S.L.RODERICK,W.W.CHAN,D.S.AGATE,L.R.OLSEN,AUTH 2 M.W.VETTING,K.R.RAJASHANKAR,D.E.COHENTITL STRUCTURE OF HUMAN PHOSPHATIDYLCHOLINE TRANSFERTITL 2 PROTEIN IN COMPLEX WITH ITS LIGAND.REF NAT.STRUCT.BIOL. V. 9 507 2002REFN ISSN 1072-8368PMID 12055623 |
Variant Set Distributions
ExAC Variants
| Number Of Residues | 197 |
| Number Of SNVs | 45 |
| Number Of Permutations | 12842 |
| Optimal Distance Threshold | 15.0 |
| K Statistic | 0.253 |
| p-value | 0.07 |
COSMIC
| Number Of Residues | 197 |
| Number Of SNVs | 3 |
| Number Of Permutations | 67 |
| Optimal Distance Threshold | 29.0 |
| K Statistic | 0.333 |
| p-value | 0.405 |
Ripley’s K Analysis Plots
ExACCOSMIC
Variant Set Comparisons
Cosmic vs. ExAC
| Number Of ExAC SNVs | 45 |
| Number Of COSMIC SNVs | 3 |
| Optimal Distance Threshold | 23.0 |
| K Statistic | -0.583 |
| p-value | 0.14 |
Pathogenic Proximity Analysis
COSMIC PathProx Analysis
